SE3020927

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1064
  • Malus domestica
  • SE3020927
  • Mutator
  • MadM43
  • MDC008310.305:759-995
  • TAATGTGTG
  • ATGTGTGCGACCTGAATTGTCTGCCCTCCTCATTTCATACCCTACTCATCCCCTCTTATTTCTATGGTCACAGTTAAGTCACGTCAATATTTTATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TA    GT C      A                    C       A  C       C        A       A                          GATTTTTTATAGAAATAA
   ATGT  G GACCTG ATTGTCTGCCCTCCTCATTT ATACCCT CT ATCCCCT TTATTTCT TGGTCAC GTTAAGTCACGTCAATATTTTATATT                  
   ||||  | |||||| |||||||||||||||||||| ||||||| || ||||||| |||||||| ||||||| ||||||||||||||||||||||||||                  T
   TGTA  C TTGGAC TAACAGACGGGAGGGGTAGA TATGGGA GG TAGGGGA AATAAAGA ACCAGTG TAATTCGGTGCAGTTGTAAAATATAA                  
GTG    AT -      G                    A       A  A       A        C       C                          GGGTAACGAAAAACAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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