SE3020929

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1066
  • Malus domestica
  • SE3020929
  • Mutator
  • MadM78
  • MDC018393.70:2724-2942
  • GTCGTAGTG
  • GTCGTAGTGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
         T  -TAG    AACCAAA      C          C       A             AG  C   ----     TAAAATTTTATCTAACGGCTATAAACATAGAGCCCC
        G CG    TGGA       TCCCCT CTGAGCTTAG AGGCTGA CCTCCTGAGCAAA  AT TGA    GCCGT                                    
        | ||    ||||       |||||| |||||||||| ||||||| |||||||||||||  || |||    |||||                                    T
        C GC    ACCT       AGGGGG GATTCGAATC TCCGACT GGAGGACTCGTTT  TA GCT    AACTT                                    
ATGTGATG T  CTAA    -------      A          C       C             AG  T   CGAC     TAAACTAAGTTACCAACATTAATAATATTGAAAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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