SE3020931

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1068
  • Malus domestica
  • SE3020931
  • Mutator
  • MadM131
  • MDC035878.5:9339-9555
  • GAACTTTTA
  • GGATCATGATCCTCTCTTGAGTAAAGGGTGAGGATCTTCTTGACCAAGCTTATCGAGTCGTTGAAATTTTATCCAACGATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
GAACTTTTA      T    C                      -      T   C   C      A                          CGATTATTATAATTTT    -   AC
         GGATCA GATC TCTCTTGAGTAAAGGGTGAGGA TCTTCT GAC AAG TTATCG GTCGTTGAAATTTTATCCAACGATTA                TAGA AGG  
         |||||| |||| |||||||||||||||||||||| |||||| ||| ||| |||||| ||||||||||||||||||||||||||                |||| |||   
         CCTAGT CTAG AGAGGACTCGTTTCCCACTCCT GGAAGA CTG TTC AGTAGC TAGCAACTTTAAAATAGGTTGCTAAT                ATTT TCC  
ATTTTCAAG      C    T                      T      -   A   A      C                          ----------------    G   TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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