SE3020940

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1077
  • Malus domestica
  • SE3020940
  • Mutator
  • MadM10
  • MDC007069.390:646-852
  • CCTATGCAT
  • ATGCATGGAGGAGGATTTTCTCCCCTCCTAATCTCTCTCCCCTTCCTCCCCTCCTATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CCT      ---    G             C  C  A    TC         -     -        ----GA    TRACAGTTAAGCCATGTCAACATCTTATATTGA
   ATGCAT   GGAG AGGATTTTCTCCC TC TA TCTC  TCCCCTTCC TCCCC TCCTATTT      ATGG                                 
   ||||||   |||| ||||||||||||| || || ||||  ||||||||| ||||| ||||||||      ||||                                  
   TACGTA   CCTC TCCTAAGAGAGGG AG AT AGAG  AGGGGAGGG AGGGG GGGATAGA      TTCG                                 
         TCC    A             A  T  A    -T         G     Y        GGAGAG    TAACGAAAAACAGAATGATAGAGATATTTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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