SE3020941

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1078
  • Malus domestica
  • SE3020941
  • Mutator
  • MadM41
  • MDC017385.254:7733-7948
  • CAAGCCATT
  • GC

Secondary structure and sequence

TSD    TIR
5'



3' 
 CAA  CATT                      C                    CT         C           AAAA   C     CY    T  --TT  AA  TT
    GC    GGATTTGGATCCTCTCCTGAGC AATGGAGAGGATCTTCCTGA  AATCATCGT GGTTGTTGGAT    ATC AACGG  ATAA TA    GT  CT  
    ||    |||||||||||||||||||||| ||||||||||||||||||||  ||||||||| |||||||||||    ||| |||||  |||| ||    ||  ||   
    CG    CCTAAACCTAGGAGAGGATTCG TTACCTCTCCTAGGAGGACT  TTAGTAGCA CCGGTAACCTA    TAG TTGCT  TGTT AT    CA  GA  
TTAC  -AAC                      A                    AR         C           AAAA   R     AA    T  TCTT  GG  AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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