SE0350002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1081
  • Arabidopsis thaliana
  • SE0350002
  • PIF/harbinger
  • To2
  • chr1:27434188-27434438
  • TAA
  • AGAGCATCCTCAATGGTAGTCTCTAAGCCTAAGTCTCTTAAACAAAATTAAAGTGTAAGTATAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA          C     TA  C       CT    C      A    -AT     T  AA    A   AAAT      TTTAAT                          CA  A C    A      AA
  AGAGCATCCT AATGG  GT TCTAAGC  AAGT TCTTAA CAAA   TAAAG GT  GTAT GAT    AATATT      TATAGGTCTCTTAAATTTGGTGAAAC  AG C AATT TCTCTT  
  |||||||||| |||||  || |||||||  |||| |||||| ||||   ||||| ||  |||| |||    ||||||      ||||||||||||||||||||||||||  || | |||| ||||||   
  TCTCGTGGGA TTACC  CA AGATTTG  TTCA AGAATT GTTT   ATTTT TA  TATA CTA    TTATAA      GTATTCAGAGAATTTAAACTACTTTG  TC G TTAA AGAGAA  
AA          T     CC  A       --    A      -    CTT     T  AA    -   -AAT      -----T                          AA  C T    C      TC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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