Plant MITE

SE0310003

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1082
Arabidopsis thaliana
SE0310003
Tc1/Mariner
St1
chr1:19251572-19251830
TA
TACTCTCTTTGTTCCTTTTTGTTTGTTTTAGGAAA

Secondary structure and sequence

TSD TIR

5'

3'

    C        CC  T       ---          -AACACAAATA      AAACATATTAAATGTTGCTTTTAAATGTATTATTTTTTGTAATTTACAATTTTCAATAACTTTAAACCAATGATAT
TACT TCTTTGTT  TT TTGTTTG   TTTTAGGAAA           TTAAGA                                                                            
|||| ||||||||  || |||||||   ||||||||||           ||||||                                                                            A
ATGA GGAGACAA  AA AACAAAC   AAAATCTTTT           ATTTTT                                                                            
    A        AA  C       TAA          ATTTTAACAAA      CTAATTAAAAAATCCAAAAGTTACGTTATGAATAATCAAAATTAACTATTTAACATTTAAAATTATTTTTAATAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0310003

TACTCTCTTTGTTCCTTTTTGTTTGTTTTAGGAAAAACACAAATATTAAGAAAACATATTAAATGTTGCTTTTAAATGTATTATTTTTTGTAATTTACAATTTTCAATAACTTTAAACCAATGATATATAATAATTTTTATTAAAATTTACAATTTATCAATTAAAACTAATAAGTATTGCATTGAAAACCTAAAAAATTAATCTTTTTAAAACAATTTTATTTTCTAAAAAATCAAACAACAAAAAACAGAGGAAGTA

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