SE0310004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1083
  • Arabidopsis thaliana
  • SE0310004
  • Tc1/Mariner
  • St2
  • chr1:20411767-20412026
  • TA
  • TATTCCCTCAATTTTATTTGATTTATAGTTTAAAGATTTTTCATACAAATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
         AA     T TG    A          ------A     CA      T  ----    AAAAAACATAAAAACCTTCTTTAATATATCTATTTTTTATAAAATATTATCAAATAAAATTAATTCGAA
TATTCCCTC  TTTTA T  ATTT TAGTTTAAAG       TTTTT  TACAAA TA    AAAG                                                                     
|||||||||  ||||| |  |||| ||||||||||       |||||  |||||| ||    ||||                                                                      
ATGAGGGAG  AAAAT A  TAAA ATCAAATTTC       AAAAA  ATGTTT AT    AACG                                                                     
         AC     T TA    G          CACAAAA     CA      T  TTAC    AAAATATAAAAAAATACGTTTTTAATTTATATAAATTATCAAAATTGATTAATATAAATTATCATATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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