SE0310005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1084
  • Arabidopsis thaliana
  • SE0310005
  • Tc1/Mariner
  • St1
  • chr1:13352748-13353002
  • N.A.
  • ACTCCCTCTGTTCATTTTTAATTGATTTTCTAGAGAAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
A   C         A  T   A        C   A        CACACATATTAAATAAACATATTACATAAATA       TCTTGTGATTTACATTTTTCATAATTTTAAACCAATGAATTCAATTATTTGTCTTAAA
 ACT CCTCTGTTC TT TTA TTGATTTT TAG GAAAAAAA                                TATTAGT                                                          
 ||| ||||||||| || ||| |||||||| ||| ||||||||                                |||||||                                                          G
 TGA GGAGACAAG AA AAT AACTAGAA ATC CTTTTTTT                                AGTTTTT                                                          
A   A         C  T   G        A   C        --------------------------TTAGAA       CCAATTAAAAATTCCAAAAGGTACATGATAAATAATCAATAATAACTACTTAAAAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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