Plant MITE

SE0310007

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1086
Arabidopsis thaliana
SE0310007
Tc1/Mariner
St3
chr1:20118812-20119032
TA
TCCCTCTGTTTCATAATATAAGTTGTTTTG

Secondary structure and sequence

TSD TIR

5'

3'

TAC   C       C                  -----------      TTTTTTTGTTTTACTATATAAGTTGTTTTCAAGTTTCTATACAAATTATATATTATTTTAATATTT
   TCC TCTGTTT ATAATATAAGTTGTTTTG           GAACAA                                                                  
   ||| ||||||| ||||||||||||||||||           ||||||                                                                   
   AGG AGACAAA TGTTATATTTAACAAAAT           CGTTTA                                                                  
ATA   T       A                  TTATTTTTGTG      ATTTTTATAAATGAAAATTTTTTAAGATGATTAGTGTTTTCTCTGATGTATTGTATTTATTAGTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0310007

TACTCCCTCTGTTTCATAATATAAGTTGTTTTGGAACAATTTTTTTGTTTTACTATATAAGTTGTTTTCAAGTTTCTATACAAATTATATATTATTTTAATATTTTATGATTATTTATGTTATGTAGTCTCTTTTGTGATTAGTAGAATTTTTTAAAAGTAAATATTTTTAATTTGCGTGTTTTTATTTAAAACAATTTATATTGTAAAACAGATGGAATA

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