SE0320008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1087
  • Arabidopsis thaliana
  • SE0320008
  • Mutator
  • M2
  • chr1:20622382-20622846
  • CTATCTAAA
  • GGGAAAAATGTTATTTAATACCTGAAATTTCAAAAATGGTCAAATTAACCGTGAACTATTGAAATGATCGTTTTATACCTCAACAAAGAGTTGATTTCTAATTTAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTATCTAAAT                          A         -    C       C      CTA       GA                                        CTATAATTTATC     CTTTTAATTTAACCTATAATTTATCGTTGACCAGGCCAAATCGACTCACCGTTAACACTCCTTAACAGCGCTCCTAACAGCCCTTACAAAACATGGCCTAACA
          GGGAAAAATGTTATTTAATACCTGAA TTTCAAAAA TGGT AAATTAA CGTGAA   TTGAAAT  TCGTTTTATACCTCAACAAAGAGTTGATTTCTAATTTAAC            GTTGA                                                                                                       
          |||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||   |||||||  ||||||||||||||||||||||||||||||||||||||||            |||||                                                                                                       G
          CCCTTTTTATAATAAATTATGGACTT AAAGTTTTT ACCG TTTAATT GCACTT   AATTTTA  GGCAAAATATGGAGTTGTTTTTCAACTGAAGATTAAATTG            ATATT                                                                                                       
TAAATCTATC                          G         C    A       A      AAG       AC                                        -----------A     CAATAGCAACTGGGCCAGTTTCGCTGAGTAACAATTGTGAAGAATTGTCGAGAGGATTGTCGCATTGATTGTTGACAAAAGCAGGAATTTGGTTGCTATTGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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