Plant MITE

SE0350011

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1090
Arabidopsis thaliana
SE0350011
PIF/harbinger
To3
chr5:26670379-26670641
TAA
AGACCATGTACATGGGTGATATTTTTAGAGTATCACAAG

Secondary structure and sequence

TSD TIR

5'

3'

TA   C     A              T          -C   --TCCAAAAAT    -      --------        ----------------------G    TAGAATATTCTTGATCAGTATCAGCCCACTAATATTTGTGA
  AGA CATGT CATGGGTGATATTT TAGAGTATCA  AAG           TATT TTTATA        TTAGTAAA                       CAAT                                         
  ||| ||||| |||||||||||||| ||||||||||  |||           |||| ||||||        ||||||||                       ||||                                         T
  TCT GTACA GTATTCACTATGAG GTTTCATAGT  TTC           ATAA AAATAT        AATTATTT                       CAGT                                         
AA   C     A              T          AA   TCAAAAAAATC    T      TACAAACA        AGATATATTATAAAAAACAAAAA    TTACACTGGTTAGTCTTCTTCAGTGCAGTCTACTATAACCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0350011

TAAGACCATGTACATGGGTGATATTTTTAGAGTATCACAAGTCCAAAAATTATTTTTATATTAGTAAAGCAATTAGAATATTCTTGATCAGTATCAGCCCACTAATATTTGTGATACCAATATCATCTGACGTGACTTCTTCTGATTGGTCACATTTGACAAAAACAAAAAATATTATATAGATTTATTAAACAAACATTATAAATAATACTAAAAAAACTCTTAATGATACTTTGTGAGTATCACTTATGAACATGCTCTAA

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