Plant MITE

SE0330014

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1093
Arabidopsis thaliana
SE0330014
hAT
Hat1
chr1:6640354-6641034
GTCTTGAT
GTCTTGATTAGGGCTGGGCA

Secondary structure and sequence

TSD TIR

5'

3'

   TT       G       AAATATTTG     TC  CT   -- T   TTATTCGATTTGATTTGATTCGAAAAATCCGAATATCCGTAAGATTTTGGACCAAAGCAAATAGGAAAATGTAATATTCGTAAAAACTGAATCAAATAGCAAATATTGTTTTAAAAAAAATTGAATATCCGATTCGATCCATATCTTTTGATATTTATTAGAATATATAGTTATATTTATATATAGATATCATAAATAGTTTGTGTATTGTTGCTATCTTACGTTTTTATGTTAAGATGTTTGTTTGATCATTTTTTTTATGTTATGTTTTGATTAATGACATCAAAAACTATCGG
GTC  GATTAGG CTGGGCA         TTCGA  CG  TCG  A TCG                                                                                                                                                                                                                                                                                                        
|||  ||||||| |||||||         |||||  ||  |||  | |||                                                                                                                                                                                                                                                                                                         
TAG  CTGATCC GACCCGT         GCTTA  TA  GGC  T TTT                                                                                                                                                                                                                                                                                                        
   TT       G       ----GCTTC     --  --   CT -   AACACTATAAATAATAAGCTAAACAAAATTGGTTTATGAACTAAAATACTAAACAAAACTAAGTTTTGAAAAGCCTATATGCTTTAAAGCTAATAGGCCTTAAAAAACACTATAAACGCCTATAGGTGAAACTATGCATATTTATAATTTTTTTTATATATTTGATATATTGGTATAATCTATAAGTTTCAAAAATAAATTGTACGAAATTTTTATTCAAGATTTATGGTTTATATCAGAAACAACAATAGTGGCCAGTTGTTTTTACAATAGTTTGATTAAGGTTTTTGATTTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0330014

GTCTTGATTAGGGCTGGGCAAAATATTTGTTCGATCCGCTTCGATTCGTTATTCGATTTGATTTGATTCGAAAAATCCGAATATCCGTAAGATTTTGGACCAAAGCAAATAGGAAAATGTAATATTCGTAAAAACTGAATCAAATAGCAAATATTGTTTTAAAAAAAATTGAATATCCGATTCGATCCATATCTTTTGATATTTATTAGAATATATAGTTATATTTATATATAGATATCATAAATAGTTTGTGTATTGTTGCTATCTTACGTTTTTATGTTAAGATGTTTGTTTGATCATTTTTTTTATGTTATGTTTTGATTAATGACATCAAAAACTATCGGGTTTTAGTTTTTGGAATTAGTTTGATAACATTTTTGTTGACCGGTGATAACAACAAAGACTATATTTGGTATTTAGAACTTATTTTTAAAGCATGTTAAATAAAAACTTTGAATATCTAATATGGTTATATAGTTTATATATTTTTTTTAATATTTATACGTATCAAAGTGGATATCCGCAAATATCACAAAAAATTCCGGATAATCGAAATTTCGTATATCCGAAAAGTTTTGAATCAAAACAAATCATAAAATCAAGTATTTGGTTAAAACAAATCGAATAATAAATATCACAATTTTTCCGGATATTCGCTTCGTGCCCAGGCCTAGTCTTGAT

Copy Cancel