SE0350018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1097
  • Arabidopsis thaliana
  • SE0350018
  • PIF/harbinger
  • To7
  • chr3:10960853-10961200
  • AAA
  • GGCCCTGAATGGATGCTGTATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAA    C      -GA  CT T    CGATTC         ---         --     ---------  A    TTTT   TTTTCGTTTTAGATTTTTGATATTATATTTTTGTTTCAAAACCCAAAAAAAAGTTAGTTTTTGGTTTTTGAGAAAAATAACGTTAATTAAGTAAAAATTA
   GGCC TGAATG   TG  G ATTT      AGTTTTTGG   ATTTAGATT  TTAGT         TT TAGA    AGA                                                                                                    
   |||| ||||||   ||  | ||||      |||||||||   |||||||||  |||||         || ||||    |||                                                                                                    A
   CCGG ACTTAC   AC  C TAAA      TCAAAAACC   AACAAAAAG  TTTGA         TG GTAA    GTT                                                                                                    
ATA    A      AAA  AT -    ACATTC         AAA         TT     ATAAAAATA  -    ----   CTAAAATTTTAAAACCAAAGGGATGTTAAATCTTTTTGTTAAAACAACCTCAAACGGTAAGTACTAAAATCAAAAAATCAAAAGGATTTTAAATCTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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