Plant MITE

SE0350021

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1100
Arabidopsis thaliana
SE0350021
PIF/harbinger
To1
chr5:3560748-3560937
TAA
AGAGCATCATTATTGGTTGTCTCTTAGATTAATTCTTAGGATAAGAACATCTCCTTTTAACTCTTATATAAGAGACA

Secondary structure and sequence

TSD TIR

5'

3'

TA                    C          A   T     ---------------------            C                       AAATG
  AGAGCATCATTATTGGTTGT TCTTAGATTA TTC TAGGA                     TAAGAACATCTC TTTTAACTCTTATATAAGAGACA     
  |||||||||||||||||||| |||||||||| ||| |||||                     |||||||||||| |||||||||||||||||||||||     A
  TCTCGTAGTAATAACCAACA AGAATCTAAT AAG ATCCT                     ATTCTTGTAGAG AAAATTGAGAATATATTCTCTGT     
AA                    A          C   C     AAAAAAAACCAGTAACTAATG            T                       AAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0350021

TAAGAGCATCATTATTGGTTGTCTCTTAGATTAATTCTTAGGATAAGAACATCTCCTTTTAACTCTTATATAAGAGACAAAATGACAAAATGTCTCTTATATAAGAGTTAAAATGAGATGTTCTTAGTAATCAATGACCAAAAAAAATCCTACGAACTAATCTAAGAAACAACCAATAATGATGCTCTAA

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