SE0310024

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1103
  • Arabidopsis thaliana
  • SE0310024
  • Tc1/Mariner
  • St1
  • chr4:5979420-5979682
  • TA
  • TACTCCCTCTGTTCCTTTTTGTTTGATTGTTTAGAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                        AAATTTGTTTC      -------- TTGATTTTTTAAGTTTTCCATGTAATATATATTGGTTAGTATTGGTGAATTGTAATTTTCAAAAAAAATAGTTA
TACTCCCTCTGTTCCTTTTTGTTTGATTGTTTAGAAAAAA           TAAAAG        A                                                                          
||||||||||||||||||||||||||||||||||||||||           ||||||        |                                                                          A
ATGAGGGAGACAAGGAAAAACAAACTAACAAATCTTTTTT           TGTGTA        T                                                                          
                                        ----------G      TAATTCTT TGTATAATTTACAACTAATATTTACATAATAAAAATCACAAAATGTTAAAAGATATTGAAATTTGGTTACTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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