SE0350026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1105
  • Arabidopsis thaliana
  • SE0350026
  • PIF/harbinger
  • To4
  • chr1:28731831-28732100
  • TTA
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
       CA - TCCATTAAGAAGAAACTCAAAAAGTTTCTCAAACAAAAAAAATATTAGTATTTTATTAAATTTTTATTATATGATTAAATTTTTATTTTAATAAAAAATTAAACCAATTGAAAGGAGAAAAATGT
 TTAGGG  T C                                                                                                                             
 ||||||  | |                                                                                                                              
 TTCTGG  T G                                                                                                                             
A      -- A AAGTAACCATCAGAAAATCCTCTAAAAGTAATGATTTTATTATTTTTATTTTTTTTTTTCTTCTCTCTCTCGCATCTTTCAAAAAGTTCACTCTTTGATACTCTATGAGAGATGTTCGATAGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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