SE0310028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1107
  • Arabidopsis thaliana
  • SE0310028
  • Tc1/Mariner
  • St4
  • chr5:16056128-16056391
  • TA
  • TACTCCCTCTGTTTCTATATAAATGTAGTTTAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
               T    -AAA            GTTTTTATTTTTTTTCAATTTAAAT    TTTTCAACTTTTTATGCAAATAATAAATGTATTTAATATTCTTTAACCAATTATATTTAATCATCTATTTTTTTATTGGT
TACTCCCTCTGTTTC ATAT    TGTAGTTTAAGG                         GTTG                                                                                
||||||||||||||| ||||    ||||||||||||                         ||||                                                                                T
ATGAGGGAGACAAAG TATA    ACATCAAATTCC                         AAAA                                                                                
               -    ATCA            -------------------------    ATGTGTGTTTAATTCTTTAGTATTTTTAGAGTAAATTAGATGGAGAAAATATATTTTTGTAGTAAATAATATTGGTTAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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