SE0310030

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1109
  • Arabidopsis thaliana
  • SE0310030
  • Tc1/Mariner
  • St4
  • chr1:23220115-23220379
  • TA
  • TACTCCCTCTGTTTCTATATAAATGTAGCTTAAGGGTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
               T    -AAA     C      GT    ATTTTTTTTCAATTTAAGT    TTTTCAACTTTCTATGCAAATAATAAATATATTTAGTATTCTTTAACCAATTATATTTAATCATCTATTTTTTTATT
TACTCCCTCTGTTTC ATAT    TGTAG TTAAGG  TTTT                   GTTG                                                                             
||||||||||||||| ||||    ||||| ||||||  ||||                   ||||                                                                             G
ATGAGGGAGACAAAG TATA    ACATC AATTCC  AAAA                   GTGT                                                                             
               -    ATCA     A      AA    ------------------A    GTTTAATTCTTCAGTATTTTTAGAGTAAATTAGATGGAGAAAATATATTTTTGTAGTAAATAATATTGGTTAAGTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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