SE0350033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1112
  • Arabidopsis thaliana
  • SE0350033
  • PIF/harbinger
  • To10
  • chr4:2965364-2965775
  • TTA
  • TAGGGGGTGTTATTC

Secondary structure and sequence

TSD    TIR
5'



3' 
T     -          -----------------   AA          TAGAATTGAAATCCAAGCCGAATCCACTGTTATTCAACTAATGATTCTATATCCAACTTTAAAATTTAGTGTTATTGGAACTCATCTTTGTAAATCATGCTTAATAGATTTTAAAGTTTGATGTTATTCAATTAAGATTTTAAATATTTCATTAAAATCCAGCGTTA
 TAGGG GGTGTTATTC                 GTT  TGGATTTTAA                                                                                                                                                                       
 ||||| ||||||||||                 |||  ||||||||||                                                                                                                                                                       T
 ATTCC CCACAATAAG                 GTT  AAGAATTTCG                                                                                                                                                                       
      A          TTAATACCTCAATTTCA   --          AAATCTGAACAAAAGACTATAACGAAAATTCTTATACAAACATACTTAAAATTTTAGAGACGTTATACAGAACCTAAAACTAAGATCACTAAATGAGTACTTTGAGGTTTCTCCAAAGTAAAGTTTACTTAATTATATGTTTCTAAAATGTTCAGAAAATCAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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