SE0310034

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1113
  • Arabidopsis thaliana
  • SE0310034
  • Tc1/Mariner
  • St1
  • chr5:16276072-16276333
  • TA
  • TACTCCATTTGTTCTTTTTTGTTTGATTGTTTAGAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                 -       ------------------CATAC              ------------------------    AAATATTGATTATAAATATATTATTTTTAGTGTTTTACAGTTTTCT
TACTCCATTTGTTCTTTTTTGTTTGATTGTTTA GAAAAAA                       ATATTAAAAAAATA                        TATT                                              
||||||||||||||||||||||||||||||||| |||||||                       ||||||||||||||                        ||||                                              A
ATGAGGTAGACAAGAAAAAACAAACTAACAAAT TTTTTTT                       AAATTCAAAAGGTA                        ACTT                                              
                                 A       TTAACAAAGATTTTCTAACTAAA              CATTATAAATAACCAATCATAACC    AACATTAAAAGTTCTTTTTATCAATTAATAGTAACCAAATCTCCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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