SE0320037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1116
  • Arabidopsis thaliana
  • SE0320037
  • Mutator
  • M5
  • chr1:12185325-12185939
  • ATATTTAAT
  • ATGGGCAATTGACAAAAAATAGTACCAAAATAAGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
ATATTTA     C    GA A         A C           TTCTTCTAAAAT     CAA    TCTAAAATTTCACAAATAACA           AA       -TA    -AAATA    -ATAAAAAATAAAAA      --CAAA       ---------CTAA    A    GAATAAAAAAAAAATTAAATAGTGGAAATATCTACCCAAAATTAAAAATAGAGATCCCAATTATAATACCACAAACTAATATAAAAATGAAAAATCTCTTTTAAATGGTGAAAATATATACTCTAAAGTGGAAATAGGGAACCCA
       ATGGG AATT  C AAAAATAGT C AAAATAAGTTT            TAGCA   CATT                     CTATAAACTTC  TAAAAAT   ATTA      TAAC               TGAGAG      CACTAAT             TATT AATT                                                                                                                                                 
       ||||| ||||  | ||||||||| | |||||||||||            |||||   ||||                     |||||||||||  |||||||   ||||      ||||               ||||||      |||||||             |||| ||||                                                                                                                                                 A
       TACTC TTAA  G TTTTTATCG G TTTTGTTCAAA            ATCGT   GTGA                     GATATTTGAAG  GTTTTTA   TAAT      ATTG               ATTTTC      GTGATTA             TTAT GGTG                                                                                                                                                 
TAATTTA     T    -G A         A A           CTACCTGTTATT     -AG    ---------------------           --       TCG    GAACTG    ATACTTCAAAAAAAG      ATAATA       AATAAAAAAGTTA    -    ATTATATTTTATATAAGTTGGTTTTTATTTAATCTTTATTTAAATTTTATAATATAAACCCCAAGAGATAAAGGTTAAATCCCATATATAAAGTTGGTAAATTTAAAAAAAAACTAAGTAAAATTATAATCAAATCCATAAAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End