Plant MITE

SE0350039

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1118
Arabidopsis thaliana
SE0350039
PIF/harbinger
To13
chr5:5348177-5348414
TAA
AGACCATCCTTATTCATGGGTTCTTAATAAAATTCTTAACATTTTTATATATAAAATA

Secondary structure and sequence

TSD TIR

5'

3'

TA   C    C     C       C    ---------T           C  TT       ---       ATAAT    TAT     -------   TCTTAATAAGTTAAGAGAATGTATCAAAAA
  AGA CATC TTATT ATGGGTT TTAA          AAAATTCTTAA AT  TTATATA   TAAAATA     TAAA   TAGGA       GGC                              
  ||| |||| ||||| ||||||| ||||          ||||||||||| ||  |||||||   |||||||     ||||   |||||       |||                              T
  TCT GTAG AATAG TACCCAA AGTT          TTTTAAGAATT TA  AATATAT   ATTTTAT     ATTT   ATCTT       GAA                              
AA   C    T     T       A    TTTCAAATCT           T  -T       TCT       -ACTT    TTT     TTCTCAA   TCTTTTCAATTTAACCGAGAATTTATTCTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0350039

TAAGACCATCCTTATTCATGGGTTCTTAATAAAATTCTTAACATTTTTATATATAAAATAATAATTAAATATTAGGAGGCTCTTAATAAGTTAAGAGAATGTATCAAAAATCTCTTATTTAAGAGCCAATTTAACTTTTCTAAGAACTCTTTTCTATTTTTTATTCATATTTTATCTTATATAATATTTTAAGAATTTTTCTAAACTTTTTGAAAACCCATTGATAATGATGCTCTAA

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