SE2330001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1120
  • Musa acuminata
  • SE2330001
  • hAT
  • Hat1
  • chr4:15313365-15313640
  • CTTCATAT
  • CATGGTATGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTCATAT  T       AATTTCGAATA  A       -   C  ----  --   ACATACCAGTCCGACGGCATACCGGTACGCGGACCGCCCACTACCGGACGGAACGTGCTACAGTGCTATACTGTAGTACTGCTATAGTGCT
        CA GGTATGC           GT CTGTCCG GTA GG    GT  GGT                                                                                           
        || |||||||           || ||||||| ||| ||    ||  |||                                                                                            
        GT CCATACG           TT ATGGCAT GCA TG    CA  GCT                                                                                           
TATACTTC  T       -----------  -       A   -  TTCA  AA   GCAACCGAGCCATGCCATGCCATGCCATAGTACATGGCGAGCCATGTGGTCCCGCATGGCTCACCAAAATTTATAAAGAAGGAGAATGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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