Plant MITE

SE2330004

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1123
Musa acuminata
SE2330004
hAT
Hat1
chr6:6381000-6381292
TTATATAT
TATATATCATGGTATGCAAT

Secondary structure and sequence

TSD TIR

5'

3'

T    TAT  T          TTTGA    TACCGCCCGGTACGGGTGGTACGTACCGATGCGAAGGCATACCGGTACGCGGACCGCCCACTACCGGATGGACCGTGCTACAGATCTACAATGCTACAGTGATACGCTGTAGCAGTGCT
 TATA   CA GGTATGCAAT     ATGG                                                                                                                       
 ||||   || ||||||||||     ||||                                                                                                                        
 ATAT   GT CCATACGTTA     TGGC                                                                                                                       
T    TTT  T          -----    ATAGCATGGCCACAAAGCTCCAACCGAACCATACCATGGCCACATGGCTCGCCATATGGTCCCGTATGGCTTGCCATGTGGTCCCAAATAGCTCGCTAAAGGAGGATGACATCGTAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330004

TTATATATCATGGTATGCAATTTTGAATGGTACCGCCCGGTACGGGTGGTACGTACCGATGCGAAGGCATACCGGTACGCGGACCGCCCACTACCGGATGGACCGTGCTACAGATCTACAATGCTACAGTGATACGCTGTAGCAGTGCTATAATGCTACAGTAGGAGGAAATCGCTCGATAAACCCTGGTGTACCGTTCGGTATGCCCTGGTATACCGCTCGGTACACCGGTACCATACCAAGCCAACCTCGAAACACCGGTACGATACGGTATTGCATACCTTGTTTTATAT

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