Plant MITE

SE2330012

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1131
Musa acuminata
SE2330012
hAT
Hat2
chr8:28928714-28928971
GTTCTTGT
TCAAGGTTCGCA

Secondary structure and sequence

TSD TIR

5'

3'

GTTCTTG   A    C           -           TTTCGACCGGGGCTCGGTACCGGTACGGTACGGTATACCGCTCGGTACACCCAGGTGTACCGAGCGGTATATTCAGGCGTGCCGAGCACT
       TCA GGTT GCAATACCGTA CCGTACCGGAG                                                                                          
       ||| |||| ||||||||||| |||||||||||                                                                                          G
       GGT CCAA CGTCATGGCTA GCATGGCGGGC                                                                                          
TGTTCTT   A    A           G           CATGCCCGCCATGCATGGCCAGGCGGTCTGAAAGCCATGCGCCTGGTATACCATGGCAAGGCTGTGACATCGTCATGACATCGTGACGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330012

GTTCTTGTCAAGGTTCGCAATACCGTACCGTACCGGAGTTTCGACCGGGGCTCGGTACCGGTACGGTACGGTATACCGCTCGGTACACCCAGGTGTACCGAGCGGTATATTCAGGCGTGCCGAGCACTGTAGCAGTGCTACAGTACTGCTACAGTGTCGGAACGGTACCATATGGTCCGCGTACCGAAAGTCTGGCGGACCGGTACGTACCGCCCGTACCGGGCGGTACGGATCGGTACTGCAAACCATGGTTCTTGT

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