Plant MITE

SE2330013

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1132
Musa acuminata
SE2330013
hAT
Hat2
chr5:7829951-7830216
GTACAGAC
ACCAAGGTTCGCAATACCGTACC

Secondary structure and sequence

TSD TIR

5'

3'

GTACAG    A    C   A     TA         AGT   GACCTGGGCTCGGTACCGGTATGGTACGGTATACCGCTCGGTAGACCCAGGTGTACCGAGCGGTATATTCAGGCGTGCCAAGCACTGTAGCA
      ACCA GGTT GCA TACCG  CCGTACCGG   TTC                                                                                            
      |||| |||| ||| |||||  |||||||||   |||                                                                                            G
      TGGT CCAA CGT ATGGC  GGCATGGCG   GGC                                                                                            
CAGACA    A    A   C     TA         ---   CATGCCCGCCATGCATGGCCAGGCGGTCTGAAGGCCATGCGCCTGGTATACAATGGCAAGGCTATGACATCGTCGTGACATCGTGACATCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330013

GTACAGACCAAGGTTCGCAATACCGTACCGTACCGGAGTTTCGACCTGGGCTCGGTACCGGTATGGTACGGTATACCGCTCGGTAGACCCAGGTGTACCGAGCGGTATATTCAGGCGTGCCAAGCACTGTAGCAGCACTACAGTGCTACAGTGCTGCTACAGTATCGGAACGGTAACATATGGTCCGCGTACCGGAAGTCTGGCGGACCGGTACGTACCGCCCGTACCGGGCGGTACGGATCGGTACTGCAAACCATGGTACAGAC

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