Plant MITE

SE2330024

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1143
Musa acuminata
SE2330024
hAT
Hat4
chr7:27123671-27123980
GTCTTACC
CCAAGGTTTGTCGTATCGTATCGTACC

Secondary structure and sequence

TSD TIR

5'

3'

GTCTTAC         G        TAT      AACGTTTC A    GGC    TA           CAGTGTATCGGACGGTACATCAGGGCATACCGAGCGGTACACCCTGATGTATCGAACAATTTTATATTTTTTTATACTGTAGTAGTGCTACA
       CCAAGGTTT TCGTATCG   CGTACC        G CCCG   TCGG  TGGTGCGATAC                                                                                            
       ||||||||| ||||||||   ||||||        | ||||   ||||  |||||||||||                                                                                            G
       GGTTCCAGA AGTATGGC   GTATGG        C GGGC   AGCC  ACCATGCATGG                                                                                            
CCATTCT         G        TTC      -------- -    -AT    -C           CCAAGCTGTCCAATGGCTATGCGCCTGGCAGGCCATGGCGATATCACGATGTTATAAAATAACATCGTGATATTGTTACTATGTCATGATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330024

GTCTTACCCAAGGTTTGTCGTATCGTATCGTACCAACGTTTCGACCCGGGCTCGGTATGGTGCGATACCAGTGTATCGGACGGTACATCAGGGCATACCGAGCGGTACACCCTGATGTATCGAACAATTTTATATTTTTTTATACTGTAGTAGTGCTACAGTATAGTACTGTATCATTGTTATAGTGCTACAATAAAATATTGTAGCACTATAGCGGTACCGGACGGTCCGCGTATCGGTAACCTGTCGAACCGGTACGTACCACCCGATACGGGCGGTATGCTTCGGTATGAGAGACCTTGGTCTTACC

Copy Cancel