SE2330028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1147
  • Musa acuminata
  • SE2330028
  • hAT
  • Hat1
  • chr9:5176507-5176782
  • CAATCAAC
  • CAAGGTATGCAATATCG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAATCAAC  A          A   ----  --         T   TTAAGGTTGGCTCGGTACGGTATGGTACCATGTACCAAGCGGTACACCAGGGCGTACCGAGCGGTACATCAGGCGTACCGAACGGTTTTATATAT
        CA GGTATGCAAT TCG    TA  TCGTACCGG GTT                                                                                               
        || |||||||||| |||    ||  ||||||||| |||                                                                                               T
        GT CCATACGTTA AGC    CA  GCAGGCCAT GTC                                                                                               
CAACTAAC  A          A   TTAT  TA         -   CGCCATGCATAGCCAGGCTGCCGTATAGCCATGCGCCTGGCGGGCGATGGTCTGTCTTGCACGATGTCACGATGTCACGATATCATTCTCCTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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