Plant MITE

SE2330031

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1150
Musa acuminata
SE2330031
hAT
Hat1
chr6:27715378-27715678
GTTTCAAC
GTTTCAACCATGGTATGCAGTACCGAATGGTACTGCTCGGTACG

Secondary structure and sequence

TSD TIR

5'

3'

   TC     T              A  G     ---------------          ----      A        TCCGACGGCATACCGGTACGCGGACCGCCAGGTACCAGACGGAACGTGCTACAGTACTACAGTATTACACTGTAGTAGTGCT
GTT  AACCA GGTATGCAGTACCG AT GTACT               GCTCGGTACG    GGCGGT CGTACCGG                                                                                  
|||  ||||| |||||||||||||| || |||||               ||||||||||    |||||| ||||||||                                                                                  A
CAA  TTGGT CCATACGTTATGGC TG CATGG               CGAGTCATGC    CCATGG CCGCATGG                                                                                  
   CT     T              A  G     TCACAAAGCTCCAAC          CATA      -        CTCGCCATGTGGTCCCGTATGACTCGCCATGTGGTCCCGCATAGCTTGTCAAAATATATAAAAGAAGAAATGACGTCGTGAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330031

GTTTCAACCATGGTATGCAGTACCGAATGGTACTGCTCGGTACGGGCGGTACGTACCGGTCCGACGGCATACCGGTACGCGGACCGCCAGGTACCAGACGGAACGTGCTACAGTACTACAGTATTACACTGTAGTAGTGCTACAGTGCTGCAGTAAAGAAGAAAATATATAAAACTGTTCGATACGCCCTGGTGTACCGCTCAGTATGCCCTGGTGTACCGCTCGGTACGCCGGTACCATACCGTACTGAGCCAACCTCGAAACACTGGTACGGTACGGTATTGCATACCTTGGTTTCAAC

Copy Cancel