Plant MITE

SE2330035

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1154
Musa acuminata
SE2330035
hAT
Hat4
chr1:3429409-3429687
GGCACTCA
CAAGGTCTGCC

Secondary structure and sequence

TSD TIR

5'

3'

GGCACTCA      C    ---A     AA    ACCGCCC     GGGCGGTACGTACCGGTCCGACAGGTTACCGGTACGTGGACCGCCCGATACCACTACAGTGCTACAGTATTATACTGTAGCACTGCTATAGTATGAAAA
        CAAGGT TGCC    TACCG  GTAT       GGTAT                                                                                                   
        |||||| ||||    |||||  ||||       |||||                                                                                                   A
        GTTCCA GCGG    GCATG  GTAT       GGCCG                                                                                                   
ACTCACGG      A    CATA     --    -------     CAAAGCTGGGCCCGAGCCATGCCATGCCATGGCCACATAACTTGCCATATAGTCCTGCATGGCTCGCCATGTGGGACCACATGGCTTGTTAATATATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330035

GGCACTCACAAGGTCTGCCATACCGAAGTATACCGCCCGGTATGGGCGGTACGTACCGGTCCGACAGGTTACCGGTACGTGGACCGCCCGATACCACTACAGTGCTACAGTATTATACTGTAGCACTGCTATAGTATGAAAAAAATATATAATTGTTCGGTACACCAGGGTGTACCGCTCGGTACGTCCTGATATACCGTTCAATACACCGGTACCGTACCGTACCGAGCCCGGGTCGAAACGCCGGTATGGTACGATACGGCGAACCTTGGGCACTCA

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