Plant MITE

SE2330036

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1155
Musa acuminata
SE2330036
hAT
Hat1
chr4:29455589-29455898
CTGAGTAG
CTGAGTAGCAAGGTATGCAAT

Secondary structure and sequence

TSD TIR

5'

3'

   AG     A          -----ACC        CCA     TC  - GTTGGCTCAGTACGATACGGTACCGGTGTATCGAGCGGTACACTAGGGCATACTGAACGGTACACCAGGGTTTACCGAGCGATTTCCTCTTATTGTAGCACTGTAGCAT
CTG  TAGCA GGTATGCAAT        GTACCGTA   GTATT  GA G                                                                                                             
|||  ||||| ||||||||||        ||||||||   |||||  || |                                                                                                             T
GAT  GTCGT CCATACGTTA        CGTGTCGG   GCCAT  GC C                                                                                                             
   GA     A          AAGCTTAC        ---     --  A GCCATGCATAGCCAGACTGCCGTATGGCTATGCGCCTGGCGGGTGATGACCTGCCTGACACGATGTCACGATGTCATTATATGACTAATATTCTCCTTTAGCGAGAATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330036

CTGAGTAGCAAGGTATGCAATACCGTACCGTACCAGTATTTCGAGGTTGGCTCAGTACGATACGGTACCGGTGTATCGAGCGGTACACTAGGGCATACTGAACGGTACACCAGGGTTTACCGAGCGATTTCCTCTTATTGTAGCACTGTAGCATTGTAAGAGCGATTTCCTCTTATAATCAGTATATTACTGTAGCACTGTAGCACAGTCCGTCCAGTAGTGGGCGGTCCGCGTATCGGTATGCCGTCAGACCGATACGTACCGCACGTACCGGGCTGTGCCATTCGAAATTGCATACCATGCTGAGTAG

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