Plant MITE

SE2330037

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1156
Musa acuminata
SE2330037
hAT
Hat4
chr11:4180999-4181277
CTAAGGAC
CAAGGTTCGCTGTACCGTACCGTACCGGT

Secondary structure and sequence

TSD TIR

5'

3'

CTAAGGAC       C         TAC       G GTTTCGA           -   GGTACGGTACCGGTGTACCGGGCGGTACATCAGGGCATACCGAGCGGTATGCCCTGGTGTACCGAATAATTTTTTATTATTTTC
        CAAGGTT GCTGTACCG   CGTACCG T       CCCGGGCTCGG TAC                                                                                    
        ||||||| |||||||||   ||||||| |       ||||||||||| |||                                                                                     
        GTTCCAG CGACATGGC   GCATGGC G       CATGGCCCGCC TGT                                                                                    
CAGGAATC       A         TTC       G ------G           A   ATGACCAGGCTGTCCAATGGCCATGCGCCCGGCGGGCCATGGCGATGTCACGATGTCATGATATGACATCGTGACGACGTCATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330037

CTAAGGACCAAGGTTCGCTGTACCGTACCGTACCGGTGTTTCGACCCGGGCTCGGTACGGTACGGTACCGGTGTACCGGGCGGTACATCAGGGCATACCGAGCGGTATGCCCTGGTGTACCGAATAATTTTTTATTATTTTCATACTGCAGCAGTGCTACAGTATAGTACTGTAGCACTGTAGCGGTACCGGGCGGCCCGCGTACCGGTAACCTGTCGGACCAGTATGTACCGCCCGGTACGGGCGGTACGCTTCGGTACAGCAGACCTTGCTAAGGAC

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