SE2330039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1158
  • Musa acuminata
  • SE2330039
  • hAT
  • Hat2
  • chr9:9817929-9818205
  • ATTTAGAT
  • ATTTAGATCAAGGTCTGCCATACT

Secondary structure and sequence

TSD    TIR
5'



3' 
              C   C     GAATC    -     GGTATGGGCGGTACGTACCGGTCCGACAGGCCAACGGTACGCGGACCGCCCACTACCGGTCCGCTGTAGCAGTGCACTGTAGCACTGTAACAGTACAGTTTA
ATTTAGATCAAGGT TGC ATACT     GTAC CGCCC                                                                                                      
|||||||||||||| ||| |||||     |||| |||||                                                                                                      C
TAGATTTAGTTCCA GCG TATGG     CATG CATGG                                                                                                      
              A   T     -----    A     CCACAAAGCTGGACCCGAGTCATGGCCATGCCATGCTACATGGCTCGCCATATGGGTCCACGTGGCTCGTGACATGACGATGATATTGTCACGTGACGTAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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