Plant MITE

SE2330045

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1164
Musa acuminata
SE2330045
hAT
Hat4
chrUn_random:126923514-126923766
GTCTCTAT
ATCAAGGT

Secondary structure and sequence

TSD TIR

5'

3'

GTCTCT        -     AT    AAGC      --    TCTCGGGCGGTATATACCGGTCCGACAGGTTATCAGTACGTGGACCGTCCGGTACCGCTATAGTGCTACAGTATAAAAAATAAAAAATT
      ATCAAGGT CTGTC  ACCG    ATACCG  TCCG                                                                                         
      |||||||| |||||  ||||    ||||||  ||||                                                                                          
      TGGTTCCA GTGAC  ATGG    TATGGC  GGCT                                                                                         
TATCTC        A     --    ----      AT    GCAAAGCTGGGCCTGAGCCATACCATGTCATGGCCACATGGCCCGCTATGTAGTCCCGCATGACTTGCCATATGGGACCACATGGCTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330045

GTCTCTATCAAGGTCTGTCATACCGAAGCATACCGTCCGTCTCGGGCGGTATATACCGGTCCGACAGGTTATCAGTACGTGGACCGTCCGGTACCGCTATAGTGCTACAGTATAAAAAATAAAAAATTATTCGGTACACCAGGGTATACCGTTCAGTACGCCCTGATGTATCGCCCGGTACACCGGTACTGTACCATACCGAGTCCGGGTCGAAACGTCGGTACGGTATGGTACAGTGAACCTTGGTCTCTAT

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