Plant MITE

SE2330046

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1165
Musa acuminata
SE2330046
hAT
Hat1
chr4:23100485-23100720
CTACTAAC
CAAGGTTCGCA

Secondary structure and sequence

TSD TIR

5'

3'

CTACTAAC  A    C   --    C   -         TATTTTGACCTGGGCTCGGTACCGGTATGGTACAGTATACCGAGCGGTACACCCAGGTGTGCTGAGTATTGTAGCACTGCT
        CA GGTT GCA  ATAC GTA CCGTACCGG                                                                                 
        || |||| |||  |||| ||| |||||||||                                                                                  
        GT CCAG CGT  TGGC TTG CATGGTGGG                                                                                 
CAATCATC  C    A   CA    -   A         CCATACCCGCCATGCATGACCAGGCTGTCCAACGGCCATGCGCCTGGCGGACAATGGCCAGGCTCACGTGACATCGTGACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330046

CTACTAACCAAGGTTCGCAATACCGTACCGTACCGGTATTTTGACCTGGGCTCGGTACCGGTATGGTACAGTATACCGAGCGGTACACCCAGGTGTGCTGAGTATTGTAGCACTGCTACAGTGCTACAGTGCACTCGGACCGGTAACAGGCGGTCCGCGTACCGGCAACCTGTCGGACCAGTACGTACCGCCCATACCGGGTGGTACAGTTCGGTACTGCAGACCCTGCTACTAAC

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