SE2330052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1171
  • Musa acuminata
  • SE2330052
  • hAT
  • Hat1
  • chrUn_random:3254957-3255181
  • ATTTTACT
  • TCAAGGTTCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTTAC   A    C  A           TACCGGTATTTCGACCTGGGCTCGGTACCGGTACGGTACGGTATACCGAGCGGTACACCCAGGTGTACCGAGTACTGTAGCAC
       TCA GGTT GC ATATCGTACCG                                                                                   
       ||| |||| || |||||||||||                                                                                    
       AGT CCAG CG GCATGGCGGGC                                                                                   
TCATTTT   C    A  -           CATGCCCGCCATGCATGGCCAGGTTGTCCAAAAGCCATGCACCTGGCTGACAATGGCCAGGCTCAGTGACATCGTGACATCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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