Plant MITE

SE2330057

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1176
Musa acuminata
SE2330057
hAT
Hat4
chr4:11249344-11249622
GTTAATAG
GTTAATAGCAAGGT

Secondary structure and sequence

TSD TIR

5'

3'

        AG      ---CT  C    CGAAGTGTATCGCCTGTACCGGGCGGTACATACCAGTCCGATAGGTTACCGGTACGTGGATCGTCCGGTACCGCTACAGTGCTACAGTACTATACTGTAGCACTGCTACAGTATG
  GTTAAT  CAAGGT     GC ATAT                                                                                                                   
  ||||||  ||||||     || ||||                                                                                                                   A
  TAATTG  GTTCCA     CA TGGT                                                                                                                   
GA      --      AGTAG  -    ATGGCATGGCTGCAAAGCTGGGCCCGAGCCATGCCATACCATGACCACATGGCCCGTTATGTAGTCCCGCATGGCTCGCCATGTGGGACCACATAGCTTGTTAAAATATGAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330057

GTTAATAGCAAGGTCTGCCATATCGAAGTGTATCGCCTGTACCGGGCGGTACATACCAGTCCGATAGGTTACCGGTACGTGGATCGTCCGGTACCGCTACAGTGCTACAGTACTATACTGTAGCACTGCTACAGTATGAAAAAAGTATAAAATTGTTCGATACACCAGGGTGTACCGCTCGGTACGCCCTGATGTATTGCCCGGTACACCAGTACCATACCGTACCGAGCCCGGGTCGAAACGTCGGTACGGTATGGTACGATGAACCTTGGTTAATAG

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