Plant MITE

SE2330059

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1178
Musa acuminata
SE2330059
hAT
Hat1
chr10:4470710-4470944
GTTCTAAT
T

Secondary structure and sequence

TSD TIR

5'

3'

GTTC --  T         - C        CC         GGTATGGGCGGTACATACCGGTCCGACAGGTTTTCGGTACGCGGACCGACTGTTACCGTTCCGAGGTACTGTAGCACTGC
    T  AA CAGGGTCTG C GTACCGAG  GTACCGCCC                                                                                
    |  || ||||||||| | ||||||||  |||||||||                                                                                 
    C  GG TTCCAAGCG T ATGGCATG  GCATGGCCA                                                                                
TAAT TT  -         T -        --         TAAAACTGGACCCGAGCCATGGCCATGCCATGCCATATTGCTCGCCATGTGAGTCCACATGGCTCATAACATCGTGACAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330059

GTTCTAATCAGGGTCTGCCGTACCGAGCCGTACCGCCCGGTATGGGCGGTACATACCGGTCCGACAGGTTTTCGGTACGCGGACCGACTGTTACCGTTCCGAGGTACTGTAGCACTGCTACAGTGCTACAATACTCGGTACACCTGAGTGTACCGCTCGTTATACCGTACCGTACCGGTACCGAGCCCAGGTCAAAATACCGGTACGGTACGGTATTGCGAACCTTGGTTCTAAT

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