Plant MITE

SE2330060

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1179
Musa acuminata
SE2330060
hAT
Hat2
chr1:18041034-18041261
GCTAAAAC
CCATGGTTTGCCGTACCGAAC

Secondary structure and sequence

TSD TIR

5'

3'

GCTAAAA   T              A  A        ----  GTACGGGCGGTACGTACCGGTCCGACAGACTTTCGGTACGCGGACCGCCTCTTACCGTTCCGGTACTGTAGCA
       CCA GGTTTGCCGTACCG AC GTACCGCC    CG                                                                         
       ||| |||||||||||||| || ||||||||    ||                                                                          
       GGT CCAAGCGGCATGGC TG CATGGCCG    GC                                                                         
CAAAATC   T              A  G        TAAA  TGGGCGTGAGCCATACCATGCCATGCCCACATGGCTGGCCATGTGGGCCCACACGGCTCGTGACATCGTCATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330060

GCTAAAACCATGGTTTGCCGTACCGAACAGTACCGCCCGGTACGGGCGGTACGTACCGGTCCGACAGACTTTCGGTACGCGGACCGCCTCTTACCGTTCCGGTACTGTAGCAGTACTGCTACAGTGCTCGGCACACCCGGGTGTACCGGTCGGTACACCCGTACCGTACCATACCGAGTGCGGGTCGAAATGCCGGTACGGTACGGTACGGCGAACCTTGGCTAAAAC

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