SE2330062

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1181
  • Musa acuminata
  • SE2330062
  • hAT
  • Hat4
  • chr8:35429062-35429319
  • CTTGTGAT
  • CAAGGTCTGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTGTGAT      C    A     AA   TACCGCCCGCATCGGGCGGTATGTACCGGTCCGACAGGTTACCGGTACACGGACCGCCCGATATCGCTACAGTACTATAGTATTATGCTGTAGCACTGCT
        CAAGGT TGTC TATCG  GCG                                                                                                    
        |||||| |||| |||||  |||                                                                                                     
        GTTCCA GCAG CATGG  ATG                                                                                                    
TAGTGTTC      A    -     -C   GTATGGCCGCAAAGCTGGACCCGAGCCATGCCATACCATGGCCACATAGCCCGTCATGTAGTCCCACATGGCTTATTAAAATATAAAAAAAAGTATGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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