Plant MITE

SE2330064

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1183
Musa acuminata
SE2330064
hAT
Hat1
chr9:5733009-5733341
ACTAGGTT
CTAGGTTCAGGGTTTTGAAT

Secondary structure and sequence

TSD TIR

5'

3'

  A    GT          G   -------C    --   GTAACAGCATACCGAGCTCTGCTCGGTACGGTACATACCGGTATGTACTGTTGGTACGCCAGGGCATACCGACAGTACACCCTAAAACCTTAAAAATACCTTCACCTTCCATGTCAGGGCATATCGATCGGTA
   CTAG  TCAGGGTTTT AAT        CCGG  TCC                                                                                                                                     
   ||||  |||||||||| |||        ||||  |||                                                                                                                                      
   GATC  AGTCCCAAGA TTA        CATG  GGG                                                                                                                                     
TTG    --          G   AAACTTCA    AC   CCATACCCACCATGCATGGTCAGGCTCTCCTATGGCCATACGCCTGGCGGGAGATAGTCCACCATGGTCACAAAACTAGCCATGGCTCCGCATAGCTGGCCACGATGGGGCCTAAAACTGGTAATAGCTCCGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330064

ACTAGGTTCAGGGTTTTGAATCCCGGTCCGTAACAGCATACCGAGCTCTGCTCGGTACGGTACATACCGGTATGTACTGTTGGTACGCCAGGGCATACCGACAGTACACCCTAAAACCTTAAAAATACCTTCACCTTCCATGTCAGGGCATATCGATCGGTACGCCTCGATAATGGTCAAAATCCGGGGTAGCACCGGTCGATACGCCTCGGTACCGATCAAAACACTGGTACCACCTGATAGAGGGCGGTCCGCATACCGGTATCCTCTCGGACTGGTACGTACCACCCATACCGGGCAGTACACTTCAAAATTGAGAACCCTGACTAGGTT

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