Plant MITE

SE2330065

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1184
Musa acuminata
SE2330065
hAT
Hat1
chr6:23147076-23147323
CTAAAAAC
CAGGGTCTGC

Secondary structure and sequence

TSD TIR

5'

3'

CTAAAAAC      C   --C         C     A   --- GTACGGGCGGTACGTACCGGTCCGACAGGTTTTCGGTACGCGGACTTACTGTTACCGGTCCGAGGCACTGTAGCAGTGCACTG
        CAGGGT TGC   GTACCGAGC GTACC CCC   G                                                                                   
        |||||| |||   ||||||||| ||||| |||   |                                                                                   T
        GTTCCA GCG   TGGCATGGC ATGGC CAT   G                                                                                   
CAAAAATC      A   TTA         -     -   AAA CTGGACCCGAGCCATGGCCATGCCATGCCACATGGCTCGCCATGTGGGTCCACATGGCTCATGACATCATGACGATGTTACGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330065

CTAAAAACCAGGGTCTGCCGTACCGAGCCGTACCACCCGGTACGGGCGGTACGTACCGGTCCGACAGGTTTTCGGTACGCGGACTTACTGTTACCGGTCCGAGGCACTGTAGCAGTGCACTGTGGCATTGTAGCAGTACTACAGTACTCGGTACACCTGGGTGTACCGCTCGGTACACCGTACCGTACCGGTACCGAGCCCAGGTCGAAATACCGGTACGGTACGGTATTGCGAACCTTGCTAAAAAC

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