Plant MITE

SE2330067

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1186
Musa acuminata
SE2330067
hAT
Hat1
chr9:30685623-30685858
TGTCAAAT
TGTCAAATCAAGGTTCGC

Secondary structure and sequence

TSD TIR

5'

3'

     T  AAT  A    C  --A       -      CCA   TT CGATCTGGGCTCGATACCAATACGGTACGGTATACCGAACGGTACACCCAGGTGTGCCGAGTACTGTAGCACTGCTAC
   TG CA   CA GGTT GC   ATACCGT ACCGTA   GTA  T                                                                              
   || ||   || |||| ||   ||||||| ||||||   |||  |                                                                               
   AC GT   GT CCAG CG   TGGCTTG CATGGC   GGG  C                                                                              
TAA  T  ---  C    A  GCA       A      ---   -- CATGCCCGCCATGCATGGCCAGGCTGTCCAACAGCCATACGCCTGGCGGACAATGGCCAAGCTCATATGACATCGTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330067

TGTCAAATCAAGGTTCGCAATACCGTACCGTACCAGTATTTCGATCTGGGCTCGATACCAATACGGTACGGTATACCGAACGGTACACCCAGGTGTGCCGAGTACTGTAGCACTGCTACAGTGCTACAGTATACTCGAACCGGTAACAGGCGGTCCGCATACCGACAACCTGTCGGACCGGTACGTACCGCCCGTACCGGGCGGTACAGTTCGGTACGGCAGACCCTGTGTCAAAT

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