Plant MITE

SE2330069

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1188
Musa acuminata
SE2330069
hAT
Hat1
chrUn_random:64744569-64744792
TGATGGAG
T

Secondary structure and sequence

TSD TIR

5'

3'

       G    AGTGTCTGCCATACCGAATCGTACCGCCCGGTACGGGCGGTACATACCGGTCCGACAGGCCAACGGTACGCAGACCGCCCGGTACCAGTCCGCACTGTAGCA
   TGAT GAGC                                                                                                      
   |||| ||||                                                                                                       
   GTAG TGTT                                                                                                      
GAG    -    CCAAGCGTTATAGCATGGCATGGCCATAAAGCTGGACCCGAGCCATGGCCATGCCATGCCACATAGCTCGCCATGTGGGTCCACATGGCTCGTGACATCGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330069

TGATGGAGCAGTGTCTGCCATACCGAATCGTACCGCCCGGTACGGGCGGTACATACCGGTCCGACAGGCCAACGGTACGCAGACCGCCCGGTACCAGTCCGCACTGTAGCAGTGCTACAGTGCTCGGTACACCTGGGTGTACCGCTCGATACACCGTACCGTACCGGTACCGAGCCCAGGTCGAAATACCGGTACGGTACGATATTGCGAACCTTGTGATGGAG

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