Plant MITE

SE2330071

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1190
Musa acuminata
SE2330071
hAT
Hat1
chrUn_random:46024854-46025143
ATTGAAAG
CATGGTATGCAATTTC

Secondary structure and sequence

TSD TIR

5'

3'

ATTGAAAG  T          T  GA     A   C  ---  ---    ---    ATA         CCGACGGCATACCGGTACGCGGACCGCCTGCTACCGGATGGACCGTGCTATAGTGCTACAGTGTTACACTGTAGCAGTGCTACA
        CA GGTATGCAAT TC  ATGGT TCG CC   GG   TACA   GGCG   CGTACCGGT                                                                                    
        || |||||||||| ||  ||||| ||| ||   ||   ||||   ||||   |||||||||                                                                                     
        GT CCATACGTTA GG  CATGG CAT GA   CA   TTCC   CGAG   CCATACCAT                                                                                    
GAAAGTTA  T          T  --     -   -  CTA  AAG    AAC    ---         GCCATGGTCACATAGCTCACCATGTGGTCCCGTATGGCTTACTATGTAGTCCCGAATGGCTCGCTAAAGGAGAATGACATCGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330071

ATTGAAAGCATGGTATGCAATTTCGAATGGTATCGCCCGGTACAGGCGATACGTACCGGTCCGACGGCATACCGGTACGCGGACCGCCTGCTACCGGATGGACCGTGCTATAGTGCTACAGTGTTACACTGTAGCAGTGCTACAGTGCTACAGTAAGAGGAAATCGCTCGGTAAGCCCTGATGTATCATTCGGTATGCCCTGGTGTACCACTCGATACACTGGTACCGTACCATACCGAGCCAACCTTGAAACATCAGTACGGTACGGTATTGCATACCTTGATTGAAAG

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