Plant MITE

SE2330073

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1192
Musa acuminata
SE2330073
hAT
Hat1
chr8:1790380-1790647
GTATGAAC
CAAGGTATGCAATACCGTACCATACCGGTGT

Secondary structure and sequence

TSD TIR

5'

3'

GTATGAAC  A          AC  -----    ATA       TTC -  GTTGGCTCAGTACGGTATGATACCGGTGTATCGAGCGGTACACCAAGGCTTACCGAGCAATTTTCTCTTACTGTAGCACTGTAGCATA
        CA GGTATGCAAT  CG     TACC   CCGGTGT   G AG                                                                                        
        || ||||||||||  ||     ||||   |||||||   | ||                                                                                         
        GT CCATACGTTA  GC     ATGG   GGCCATA   C TG                                                                                        
CAAGTATA  A          AA  TTACT    -CG       --- T  CCATACATGGCCAGGCTGCCGTATGACCATGCGCCTGACGAGTGATAGCCTACCTGGCACGATATCACGATGTCATTATGTGACATCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330073

GTATGAACCAAGGTATGCAATACCGTACCATACCGGTGTTTCGAGGTTGGCTCAGTACGGTATGATACCGGTGTATCGAGCGGTACACCAAGGCTTACCGAGCAATTTTCTCTTACTGTAGCACTGTAGCATAGCTACAGTGTATTACTGTAGCACTATAGCACGGTCCATCCGATAGTGAGCAGTCCGCGTACCAGTATGCCGTCGGACCGGTACATACCGTTCATACCGGGCGGTATCATTCGAAATTGCATACCATGATATGAAC

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