Plant MITE

SE2330076

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1195
Musa acuminata
SE2330076
hAT
Hat4
chr9:4197582-4197836
GTTATAAC
GTTATAACCAAGGTTCGTCGTACC

Secondary structure and sequence

TSD TIR

5'

3'

               C        ----       AC   CGTTTCGACCCGGGCTCGGTACAGTACGATACTGATGTACCGGGCGGTACATCAGGGCCTACCGAGCGGTACACCCTGGTTTACCGAATA
GTTATAACCAAGGTT GTCGTACC    GTACCGT  CAG                                                                                          
||||||||||||||| ||||||||    |||||||  |||                                                                                          A
CGATATTGGTTCCAG CAGTATGG    GTATGGC  GGG                                                                                          
               A        CTTC       --   TATAGCCCGCCATGCATGGCCAGGCTATTCAATGGCCATATGCCTGGCAGGCCATGGCGATGTCACGATGTCATACTTTTTTCATATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330076

GTTATAACCAAGGTTCGTCGTACCGTACCGTACCAGCGTTTCGACCCGGGCTCGGTACAGTACGATACTGATGTACCGGGCGGTACATCAGGGCCTACCGAGCGGTACACCCTGGTTTACCGAATAATTTTATACTTTTTTCATACTGTAGCACTGTAGCGGTACCGGACGGTCCGTATACCGGTAACTTATCGGACCGGTACGTACCGCCCGATATGGGCGGTATGCTTCGGTATGACAGACCTTGGTTATAGC

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