SE2330077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1196
  • Musa acuminata
  • SE2330077
  • hAT
  • Hat1
  • chr4:20267982-20268263
  • GTTCAAAC
  • GTTCAAACCAAGGTATGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
   CA     A          ACCA   ----       GTGTTTCGAGGTTGGCTCGGTACAGTACGGTACCGGTATACCGAGCGGTACACCAGGGCGTACCGAACAGTATACCAGGGCTTACCGAGCGATTTCCTCTTATTG
GTT  AACCA GGTATGCAAT    TAC    CGTACTG                                                                                                         
|||  ||||| ||||||||||    |||    |||||||                                                                                                          
CAA  TTGGT CCATACGTTA    GCT    ATGGTGG                                                                                                         
   AC     A          --AA   TACC       ACCATGCCCGCCATACATAGCCAGGCTGCCGTATGGCCATGTGCCTGGCAGGTGATAGCCTGCCTGGTACGATGTCATTATGTGACGATGTGACGATATCACGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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