Plant MITE

SE2330078

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1197
Musa acuminata
SE2330078
hAT
Hat1
chr8:19153515-19153750
CTTTCAAC
CAGGGTCTGC

Secondary structure and sequence

TSD TIR

5'

3'

CTTTCAAC      C   --C      -   CA       CAGTACGGACGGTACGTACCGGTCCGACAGGTTGTCGGTACGCAGACCGACTGTTACCGGTTTGAGTGCACTGTAGCACT
        CAGGGT TGC   GTACCG AGC  TACCGCC                                                                                
        |||||| |||   |||||| |||  |||||||                                                                                G
        GTTCCA GCG   TGGCAT GCA  TGGCCAT                                                                                
CAACTTTC      A   TTA      A   --       AAAGCTGGACCCGAGCCATGGCCATGCCATGCCATATGGCTCGCCATGTGGGTCCACATGGCTCATGACATCGTGACGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330078

CTTTCAACCAGGGTCTGCCGTACCGAGCCATACCGCCCAGTACGGACGGTACGTACCGGTCCGACAGGTTGTCGGTACGCAGACCGACTGTTACCGGTTTGAGTGCACTGTAGCACTGTAGCAGTGCTACAGTACTCGGTACACCTGGGTGTACCGCTCGGTATACCGTACCGTACCGGTACCGAGCCCAGGTCGAAATACCGGTACGATACGGTATTGCGAACCTTGCTTTCAAC

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